STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL25494.1Transcriptional regulator, AlpA family. (66 aa)    
Predicted Functional Partners:
SDK76008.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.892
SDK83734.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.892
SDL25446.1
Hypothetical protein.
       0.727
SDL25543.1
Hypothetical protein.
       0.588
SDK77122.1
Malate/lactate dehydrogenase.
     
 0.541
SDK12667.1
Nitrogen regulatory protein P-II family.
  
  
  0.518
SDJ99391.1
Aconitase.
     
 0.508
SDL25403.1
Methyltransferase domain-containing protein.
  
    0.491
SDK88025.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
  0.478
SDK07725.1
Malate dehydrogenase (oxaloacetate-decarboxylating).
     
 0.456
Your Current Organism:
Natronincola ferrireducens
NCBI taxonomy Id: 393762
Other names: DSM 18346, N. ferrireducens, Natronincola ferrireducens Zhilina et al. 2009, VKM B-2402, strain Z-0511
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.