STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL29790.1Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding Fis domains. (596 aa)    
Predicted Functional Partners:
SDK76237.1
Hpt domain-containing protein.
    
 0.865
SDK83138.1
Signal transduction histidine kinase.
   
 0.843
SDK71443.1
RNA polymerase, sigma 54 subunit, RpoN/SigL.
 
  
 0.815
SDJ99303.1
PAS domain S-box-containing protein.
    
 0.712
SDL29747.1
Uncharacterized membrane protein, DUF441 family.
       0.580
SDK24116.1
PAS domain S-box-containing protein.
    
 0.462
SDJ91704.1
HDIG domain-containing protein.
    
 0.461
SDK76200.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
    
 0.451
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
  
    0.418
Your Current Organism:
Natronincola ferrireducens
NCBI taxonomy Id: 393762
Other names: DSM 18346, N. ferrireducens, Natronincola ferrireducens Zhilina et al. 2009, VKM B-2402, strain Z-0511
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