STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL32949.1DNA-binding transcriptional regulator LsrR, DeoR family. (319 aa)    
Predicted Functional Partners:
SDJ87815.1
Dihydroxyacetone kinase DhaK subunit.
  
  0.955
SDL32879.1
Fructose-bisphosphate aldolase, class I.
 
  
 0.603
SDJ87858.1
Dihydroxyacetone kinase DhaL subunit.
 
  
  0.574
SDL32914.1
L-iditol 2-dehydrogenase.
 
   
 0.567
SDL32987.1
Amino acid/polyamine/organocation transporter, APC superfamily.
       0.523
SDK06388.1
2-dehydro-3-deoxygalactonokinase.
  
     0.456
SDL33022.1
Riboflavin kinase / FMN adenylyltransferase; Belongs to the ribF family.
       0.424
SDK92889.1
Glycerol dehydrogenase.
 
  
  0.411
SDK06071.1
Glycerol dehydrogenase.
 
  
  0.410
gpsA
Glycerol 3-phosphate dehydrogenase (NAD(P)+); Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
    
  0.404
Your Current Organism:
Natronincola ferrireducens
NCBI taxonomy Id: 393762
Other names: DSM 18346, N. ferrireducens, Natronincola ferrireducens Zhilina et al. 2009, VKM B-2402, strain Z-0511
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.