STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LuxQAraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (968 aa)    
Predicted Functional Partners:
EvgS
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.994
PorA_1
Racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.807
HQ45_09190
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.741
HQ45_06210
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.725
vraR
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.700
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.691
rpoD
RNA polymerase sigma factor rpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
 
 0.688
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
  
  
 0.670
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.667
HQ45_03395
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.659
Your Current Organism:
Porphyromonas crevioricanis
NCBI taxonomy Id: 393921
Other names: ATCC 55563, CCUG 47702 [[Porphyromonas cansulci]], JCM 13913 [[Porphyromonas cansulci]], JCM 15906, NCTC 12858 [[Porphyromonas cansulci]], NUM 402, P. crevioricanis, Porphyromonas cansulci, VPB 4875 [[Porphyromonas cansulci]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.