STRINGSTRING
NGR_c00030 protein (Sinorhizobium fredii NGR234) - STRING interaction network
"NGR_c00030" - annotation not available in Sinorhizobium fredii NGR234
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NGR_c00030annotation not available (424 aa)    
Predicted Functional Partners:
NGR_c00020
annotation not available (124 aa)
     
  0.989
NGR_c00040
Uncharacterized protein; Similar to activator of Hsp90 ATPase 1 family protein (160 aa)
          0.954
NGR_c00050
annotation not available (287 aa)
 
          0.804
NGR_c03670
annotation not available (265 aa)
 
        0.501
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box)- 5’-TTATC[CA]A[CA]A-3’. DnaA binds to ATP and to acidic phospholipids (480 aa)
              0.497
NGR_c09490
annotation not available (107 aa)
   
          0.424
NGR_c28270
annotation not available (112 aa)
   
          0.421
NGR_c30770
annotation not available (236 aa)
 
        0.405
NGR_c19940
annotation not available (235 aa)
 
        0.400
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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