STRINGSTRING
NGR_c00190 protein (Sinorhizobium fredii NGR234) - STRING interaction network
"NGR_c00190" - annotation not available in Sinorhizobium fredii NGR234
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NGR_c00190annotation not available (187 aa)    
Predicted Functional Partners:
NGR_c00180
annotation not available (275 aa)
   
   
  0.949
NGR_c00200
annotation not available (239 aa)
 
     
  0.934
lptD
LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family (782 aa)
 
 
  0.861
NGR_c09220
annotation not available (212 aa)
   
     
  0.684
NGR_c27600
annotation not available (215 aa)
   
          0.670
NGR_c04240
annotation not available (78 aa)
   
          0.664
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is responsible for the expression of the nitrogen fixation genes (nif operon), glnA and dctA for dicarboxylate transport. The open complex (sigma-54 and core RNA polymerase) serves as the receptor for receipt of the melting signal from the remotely bound activator proteins NifA, NtrC, or DctD for the expression of the regulated proteins (519 aa)
   
   
  0.639
NGR_c09000
annotation not available (312 aa)
 
        0.619
NGR_c27550
annotation not available (91 aa)
   
          0.585
NGR_c09680
annotation not available (168 aa)
   
     
  0.584
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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