Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ACP23877.1Integrase catalytic core domain protein. (400 aa)    
Predicted Functional Partners:
ACP24721.1
Putative transposase for insertion sequence NGRIS-22c; Similar to y4rI of pNGR234a.
 
   
 0.585
ACP25252.1
Putative transposase for insertion sequence NGRIS-22b; Similar to y4rI of pNGR234a.
 
   
 0.585
ACP26842.1
Putative transposase for insertion sequence NGRIS-22a; Similar to y4rI of pNGR234a.
 
   
 0.585
ACP26497.1
Hypothetical protein.
  
   
 0.532
ACP24307.1
Putative transposase for insertion sequence NGRIS-20f.
 
     0.499
ACP25797.1
Putative transposase for insertion sequence NGRIS-20d.
 
     0.499
ACP26717.1
Putative transposase for insertion sequence NGRIS-20c.
 
     0.499
ACP27309.1
Putative transposase for insertion sequence NGRIS-20a.
 
     0.497
ACP25135.1
Putative transposase for insertion sequence NGRIS-20e.
 
     0.483
ACP25366.1
Amino-terminus of predicted integrase/transposase.
 
   
 0.483
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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