STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP23880.1Hypothetical protein. (239 aa)    
Predicted Functional Partners:
ACP23879.1
Predicted RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 
 0.961
ACP23881.1
Conserved hypothetical protein contains beta-Ig-H3/fasciclin domain.
 
   
 0.668
argB
N-acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
       0.511
ACP25381.1
ECF family sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 
 0.426
ACP26221.1
RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 
 0.424
ACP23966.1
Hypothetical protein.
  
     0.419
rpoE
RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 
 0.414
ACP25771.1
ECF family sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 
 0.405
ACP24151.1
Predicted two-component signal transduction response regulator, contains receiver domain.
 
 
 
 0.404
cycG
Diheme cytochrome c-type.
  
     0.402
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.