Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ACP23913.1Periplasmic binding protein/LacI transcriptionalregulator. (341 aa)    
Predicted Functional Partners:
ACP23914.1
Putative ribose transport system, inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.990
ACP23915.1
Predicted sugar ABC transporter, ATP binding protein.
 
 0.990
ACP23912.1
Putative ROK family protein.
 
  
 0.869
FrcK
Conserved hypothetical protein contains uridine kinase related domain.
 
     0.711
ACP26362.1
Putative ABC transport system, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.693
ACP26361.1
Putative sugar ABC transport system, membrane protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.677
ACP26360.1
Putative sugar ABC transporter, ATP-binding protein.
 
 
 0.644
ACP24046.1
Predicted ABC transporter, inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.626
ACP24045.1
Predicted ABC transporter, inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.604
ACP26182.1
Xylose ABC transporter, ATP-binding protein.
 
 
 0.593
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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