Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACP23978.1Hypothetical protein, putative transmembrane protein. (88 aa)    
Predicted Functional Partners:
ACP23979.1
Conserved hypothetical protein contains SCP-like domain.
       0.824
ACP26505.1
Hypothetical protein.
  
     0.754
ACP24561.1
Hypothetical protein.
  
     0.752
ACP25100.1
Hypothetical protein.
  
     0.751
ACP24318.1
Invasion associated locus B.
  
     0.747
ACP24512.1
Hypothetical protein.
  
     0.747
ACP25044.1
Hypothetical protein.
  
     0.746
ACP26613.1
Hypothetical protein.
  
     0.732
ACP24645.1
Hypothetical protein.
  
     0.730
ACP24556.1
Hypothetical protein.
  
     0.719
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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