Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACP23997.1Putative HTH-type transcriptional regulator, TetR family. (302 aa)    
Predicted Functional Partners:
ACP23999.1
Predicted thiamine pyrophosphate protein, TPP binding domain protein; Belongs to the TPP enzyme family.
 
     0.812
ACP23998.1
Predicted aspartate aminotransferase.
 
     0.807
ACP23995.1
Putative ABC transporter, periplasmic amino acid-binding protein.
 
 
   0.696
ACP23996.1
Amino acid ABC transporter, ATP-binding protein.
 
     0.638
ACP23993.1
Putative amino acid ABC transporter, inner membrane component.
 
     0.588
ACP23994.1
Putative amino acid ABC transporter, inner membrane component.
 
     0.562
ACP25678.1
Hypothetical protein.
  
     0.462
ACP24399.1
long-chain-fatty-acid--CoA ligase.
     
 0.437
ACP26554.1
DNA-binding response regulator.
  
     0.436
lcdH
Bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
  
 0.435
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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