STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP23998.1Predicted aspartate aminotransferase. (396 aa)    
Predicted Functional Partners:
arcA1
Arginase; Belongs to the arginase family.
   
 
 0.903
ACP23999.1
Predicted thiamine pyrophosphate protein, TPP binding domain protein; Belongs to the TPP enzyme family.
 
  
 0.898
argH
Argininosuccinate lyase 1.
  
 
 0.818
ACP23997.1
Putative HTH-type transcriptional regulator, TetR family.
 
     0.807
arcA2
Arginine deiminase.
    
 0.806
pheA
Prephenate dehydratase PheA.
 
 
 0.650
lysC
Aspartate kinase; Belongs to the aspartokinase family.
  
 0.609
ACP23996.1
Amino acid ABC transporter, ATP-binding protein.
 
     0.564
ACP23995.1
Putative ABC transporter, periplasmic amino acid-binding protein.
 
    0.549
mdh
malate/L-sulfolactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
     
 0.510
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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