ACP23998.1 protein (Sinorhizobium fredii NGR234)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ACP23998.1

Predicted aspartate aminotransferase. (396 aa)

Predicted Functional Partners:

ACP23999.1

0.902

arcA1

0.901

argH

0.815

ACP23997.1

0.807

arcA2

0.802

pheA

0.654

lysC

0.588

ACP23996.1

0.564

ACP23995.1

0.535

ACP23993.1

0.508

Your Current Organism:

Sinorhizobium fredii NGR234

NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACP23993.1	ACP23995.1	NGR_c01930	NGR_c01950	Putative amino acid ABC transporter, inner membrane component.	Putative ABC transporter, periplasmic amino acid-binding protein.	0.882
ACP23993.1	ACP23996.1	NGR_c01930	NGR_c01960	Putative amino acid ABC transporter, inner membrane component.	Amino acid ABC transporter, ATP-binding protein.	0.991
ACP23993.1	ACP23997.1	NGR_c01930	NGR_c01970	Putative amino acid ABC transporter, inner membrane component.	Putative HTH-type transcriptional regulator, TetR family.	0.588
ACP23993.1	ACP23998.1	NGR_c01930	NGR_c01980	Putative amino acid ABC transporter, inner membrane component.	Predicted aspartate aminotransferase.	0.508
ACP23993.1	ACP23999.1	NGR_c01930	NGR_c01990	Putative amino acid ABC transporter, inner membrane component.	Predicted thiamine pyrophosphate protein, TPP binding domain protein; Belongs to the TPP enzyme family.	0.515
ACP23995.1	ACP23993.1	NGR_c01950	NGR_c01930	Putative ABC transporter, periplasmic amino acid-binding protein.	Putative amino acid ABC transporter, inner membrane component.	0.882
ACP23995.1	ACP23996.1	NGR_c01950	NGR_c01960	Putative ABC transporter, periplasmic amino acid-binding protein.	Amino acid ABC transporter, ATP-binding protein.	0.922
ACP23995.1	ACP23997.1	NGR_c01950	NGR_c01970	Putative ABC transporter, periplasmic amino acid-binding protein.	Putative HTH-type transcriptional regulator, TetR family.	0.696
ACP23995.1	ACP23998.1	NGR_c01950	NGR_c01980	Putative ABC transporter, periplasmic amino acid-binding protein.	Predicted aspartate aminotransferase.	0.535
ACP23995.1	ACP23999.1	NGR_c01950	NGR_c01990	Putative ABC transporter, periplasmic amino acid-binding protein.	Predicted thiamine pyrophosphate protein, TPP binding domain protein; Belongs to the TPP enzyme family.	0.582
ACP23996.1	ACP23993.1	NGR_c01960	NGR_c01930	Amino acid ABC transporter, ATP-binding protein.	Putative amino acid ABC transporter, inner membrane component.	0.991
ACP23996.1	ACP23995.1	NGR_c01960	NGR_c01950	Amino acid ABC transporter, ATP-binding protein.	Putative ABC transporter, periplasmic amino acid-binding protein.	0.922
ACP23996.1	ACP23997.1	NGR_c01960	NGR_c01970	Amino acid ABC transporter, ATP-binding protein.	Putative HTH-type transcriptional regulator, TetR family.	0.638
ACP23996.1	ACP23998.1	NGR_c01960	NGR_c01980	Amino acid ABC transporter, ATP-binding protein.	Predicted aspartate aminotransferase.	0.564
ACP23996.1	ACP23999.1	NGR_c01960	NGR_c01990	Amino acid ABC transporter, ATP-binding protein.	Predicted thiamine pyrophosphate protein, TPP binding domain protein; Belongs to the TPP enzyme family.	0.520
ACP23997.1	ACP23993.1	NGR_c01970	NGR_c01930	Putative HTH-type transcriptional regulator, TetR family.	Putative amino acid ABC transporter, inner membrane component.	0.588
ACP23997.1	ACP23995.1	NGR_c01970	NGR_c01950	Putative HTH-type transcriptional regulator, TetR family.	Putative ABC transporter, periplasmic amino acid-binding protein.	0.696
ACP23997.1	ACP23996.1	NGR_c01970	NGR_c01960	Putative HTH-type transcriptional regulator, TetR family.	Amino acid ABC transporter, ATP-binding protein.	0.638
ACP23997.1	ACP23998.1	NGR_c01970	NGR_c01980	Putative HTH-type transcriptional regulator, TetR family.	Predicted aspartate aminotransferase.	0.807
ACP23997.1	ACP23999.1	NGR_c01970	NGR_c01990	Putative HTH-type transcriptional regulator, TetR family.	Predicted thiamine pyrophosphate protein, TPP binding domain protein; Belongs to the TPP enzyme family.	0.812

page 1 of 3

Server load: low (12%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About