Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACP24123.1Hypothetical protein. (79 aa)    
Predicted Functional Partners:
ACP25186.1
Hypothetical protein.
  
     0.729
ACP24887.1
Acetyltransferase.
  
     0.718
ACP24125.1
Putative HTH transcriptional regulator, XRE family.
 
     0.703
ACP26116.1
Putative transmembrane protein.
  
     0.685
ACP26424.1
Conserved hypothetical protein.
  
     0.671
ACP26055.1
Hypothetical protein.
  
     0.616
ACP26419.1
Putative acetyltransferase.
  
     0.612
ACP24649.1
Hypothetical protein.
  
     0.590
ACP24601.1
Hypothetical protein.
  
     0.578
ACP25789.1
Hypothetical protein.
  
     0.578
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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