Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
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Co-expression
Experiments
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[Homology]
Score
potHPutrescine ABC transport system permease protein PotH. (303 aa)    
Predicted Functional Partners:
potI
Putrescine ABC transporter system permease protein PotI.
 0.999
potA
Spermidine/putrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 0.996
ACP24126.1
Spermidine/putrescine ABC transporter, periplasmic substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
 
 0.988
ACP26287.1
Binding-protein-dependent transport systems inner membrane component.
 
 0.962
ACP25933.1
Putative transmembrane component of ABC transporter.
 
 
 0.947
ACP25931.1
Putative ATP-binding component of ABC transporter; Belongs to the ABC transporter superfamily.
 
 
 0.904
ACP24272.1
Putative spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein.
 
  
 0.885
ACP26289.1
Putative ATP-binding component of ABC transporter; Belongs to the ABC transporter superfamily.
 
 
 0.838
ACP25913.1
Putative transmembrane component of ABC transporter.
  
 
 0.822
ACP25914.1
Putative ATP-binding component of ABC transporter; Belongs to the ABC transporter superfamily.
 
 
 0.799
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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