potI protein (Sinorhizobium fredii NGR234) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

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[Homology]

Score

potI

annotation not available (273 aa)

Predicted Functional Partners:

potH

0.999

NGR_c03280

0.998

potA

0.995

NGR_c04760

0.884

NGR_c21710

0.882

NGR_c25310

0.879

NGR_c21700

0.747

NGR_c21500

0.710

NGR_c25320

0.595

NGR_c21690

0.564

Your Current Organism:

Sinorhizobium fredii NGR234

NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NGR_c03280	NGR_c21700	NGR_c03280	NGR_c21700	Putrescine-binding periplasmic protein; Required for the activity of the bacterial periplasmic transport system of putrescine	annotation not available	0.560
NGR_c03280	NGR_c21710	NGR_c03280	NGR_c21710	Putrescine-binding periplasmic protein; Required for the activity of the bacterial periplasmic transport system of putrescine	annotation not available	0.710
NGR_c03280	NGR_c25310	NGR_c03280	NGR_c25310	Putrescine-binding periplasmic protein; Required for the activity of the bacterial periplasmic transport system of putrescine	annotation not available	0.772
NGR_c03280	NGR_c25320	NGR_c03280	NGR_c25320	Putrescine-binding periplasmic protein; Required for the activity of the bacterial periplasmic transport system of putrescine	annotation not available	0.406
NGR_c03280	potA	NGR_c03280	NGR_c03290	Putrescine-binding periplasmic protein; Required for the activity of the bacterial periplasmic transport system of putrescine	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system	0.982
NGR_c03280	potH	NGR_c03280	NGR_c03300	Putrescine-binding periplasmic protein; Required for the activity of the bacterial periplasmic transport system of putrescine	annotation not available	0.995
NGR_c03280	potI	NGR_c03280	NGR_c03310	Putrescine-binding periplasmic protein; Required for the activity of the bacterial periplasmic transport system of putrescine	annotation not available	0.998
NGR_c04760	NGR_c21700	NGR_c04760	NGR_c21700	annotation not available	annotation not available	0.565
NGR_c04760	NGR_c21710	NGR_c04760	NGR_c21710	annotation not available	annotation not available	0.715
NGR_c04760	NGR_c25310	NGR_c04760	NGR_c25310	annotation not available	annotation not available	0.809
NGR_c04760	NGR_c25320	NGR_c04760	NGR_c25320	annotation not available	annotation not available	0.468
NGR_c04760	potA	NGR_c04760	NGR_c03290	annotation not available	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system	0.722
NGR_c04760	potH	NGR_c04760	NGR_c03300	annotation not available	annotation not available	0.848
NGR_c04760	potI	NGR_c04760	NGR_c03310	annotation not available	annotation not available	0.884
NGR_c21500	potI	NGR_c21500	NGR_c03310	annotation not available	annotation not available	0.710
NGR_c21690	NGR_c21700	NGR_c21690	NGR_c21700	annotation not available	annotation not available	0.875
NGR_c21690	NGR_c21710	NGR_c21690	NGR_c21710	annotation not available	annotation not available	0.941
NGR_c21690	NGR_c25310	NGR_c21690	NGR_c25310	annotation not available	annotation not available	0.446
NGR_c21690	potH	NGR_c21690	NGR_c03300	annotation not available	annotation not available	0.543
NGR_c21690	potI	NGR_c21690	NGR_c03310	annotation not available	annotation not available	0.564

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