Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACP24130.1AsmA protein family precursor. (641 aa)    
Predicted Functional Partners:
ACP24360.1
Putative transmembrane protein.
 
     0.757
ACP25146.1
Hypothetical protein.
  
     0.725
ACP26942.1
Hypothetical protein.
  
     0.713
ACP23983.1
Hypothetical protein.
  
     0.712
ACP26510.1
Hypothetical protein.
  
     0.682
ACP26609.1
Hypothetical protein.
  
     0.675
ACP24675.1
Hypothetical protein.
  
     0.668
motD
Chemotaxis protein motility protein D.
  
     0.662
ACP25186.1
Hypothetical protein.
  
     0.658
ACP26814.1
Conserved hypothetical protein.
  
   
 0.658
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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