Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACP24132.1ABC transporter, membrane spanning protein. (560 aa)    
Predicted Functional Partners:
ACP24141.1
Extracelluar solute-binding protein, family 1.
 
 
 0.979
ACP25150.1
ABC transporter related; Belongs to the ABC transporter superfamily.
 
 0.962
ACP25717.1
Putative transmembrane component of ABC transporter.
  
  
 
0.906
ACP25718.1
Putative solute-binding component of ABC transporter.
  
 
 0.900
ACP25716.1
Putative ATP-binding component of ABC transporter.
 
  
 0.841
ACP24133.1
Predicted sensor histidine kinase protein with ATP-binding domain.
       0.581
ACP25914.1
Putative ATP-binding component of ABC transporter; Belongs to the ABC transporter superfamily.
 
 
 0.566
potA
Spermidine/putrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
 0.555
ACP26289.1
Putative ATP-binding component of ABC transporter; Belongs to the ABC transporter superfamily.
 
 
 0.555
thiQ
Thiamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Thiamine importer (TC 3.A.1.19.1) family.
 
  
 0.529
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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