STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RirAPutative transcriptional regulator, Rrf2 family. (154 aa)    
Predicted Functional Partners:
ACP25308.1
Cysteine desulfurase.
  
  
 0.835
ACP25039.1
Possible nitrogen-fixing NifU-like protein.
  
  
 0.637
ACP24141.1
Extracelluar solute-binding protein, family 1.
  
  
 0.520
ACP25883.1
Molecular chaperone, DnaJ family.
  
  
 0.469
fliG
Flagellar motor switch protein FliG.
   
   0.464
ACP24283.1
Putative dioxygenase reductase subunit.
  
  
 0.438
paaK
phenylacetate-CoA oxygenase/reductase PaaK.
  
  
 0.438
ACP26388.1
Putative dioxygenase reductase subunit.
  
  
 0.438
ACP26314.1
Putative Rrf2 family protein.
  
   
0.420
dppA
Periplasmic dipeptide ABC transport protein precursor DppA.
     
 0.408
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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