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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dppAPeriplasmic dipeptide ABC transport protein precursor DppA. (531 aa)    
Predicted Functional Partners:
dppB
Dipeptide ABC transport system permease protein DppB.
 
 0.996
dppC
Dipeptide ABC transport system permease protein DppC.
 0.996
dppD
Dipeptide ABC transporter ATP-binding protein DppD.
 
 0.990
dppF
Dipeptide ABC transporter ATP-binding protein DppF; Belongs to the ABC transporter superfamily.
 
 0.989
ACP26201.1
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.904
ACP26200.1
Putative transmembrane component of ABC transporter.
 
 0.898
ACP25925.1
Putative ABC transporter, permease protein.
 
 
 0.847
ACP25924.1
Putative permease component of ABC transporter.
 
 
 0.844
ACP26199.1
Dipeptide ABC transporter, ATP-binding protein.
 
 
 0.597
ACP24141.1
Extracelluar solute-binding protein, family 1.
     
 0.549
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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