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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppBDipeptide ABC transport system permease protein DppB. (334 aa)    
Predicted Functional Partners:
dppD
Dipeptide ABC transporter ATP-binding protein DppD.
 
 0.998
dppC
Dipeptide ABC transport system permease protein DppC.
 
 0.997
dppF
Dipeptide ABC transporter ATP-binding protein DppF; Belongs to the ABC transporter superfamily.
 
 0.997
dppA
Periplasmic dipeptide ABC transport protein precursor DppA.
 0.994
ACP26200.1
Putative transmembrane component of ABC transporter.
  
 0.930
ACP26199.1
Dipeptide ABC transporter, ATP-binding protein.
 
 
 0.919
ACP25925.1
Putative ABC transporter, permease protein.
  
 0.908
ACP26202.1
ABC transporter, periplasmic oligopeptide-binding protein.
 
 0.820
ACP26198.1
Putative ATP-binding component of ABC transporter.
  
 0.744
ACP27203.1
ABC transporter related; Belongs to the ABC transporter superfamily.
  
 0.744
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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