STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP24233.1Short-chain dehydrogenase/reductase. (256 aa)    
Predicted Functional Partners:
ACP24696.1
Galactose 1-dehydrogenase.
   
 
  0.904
galM
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
   
 
 0.902
dgoK
2-dehydro-3-deoxygalactonokinase.
 
     0.855
dgoA
Keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase.
 
  
 0.843
ACP24230.1
Gluconolactonase.
 
  
 0.835
ACP24399.1
long-chain-fatty-acid--CoA ligase.
 
 
 0.713
ACP24665.1
Putative short-chain dehydrogenase/reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.695
ACP24416.1
Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.690
ACP25271.1
Predicted oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.642
ACP24234.1
Putative IclR family transcriptional regulator.
 
  
 0.626
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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