Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACP24262.1Conserved hypothetical protein. (645 aa)    
Predicted Functional Partners:
ACP24261.1
LemA family protein.
 
     0.931
ACP24260.1
Hypothetical protein.
       0.693
glyQ
glycine--tRNA ligasealpha chain; GlyRS.
       0.575
glyS
glycine--tRNA ligasebeta chain; GlyRS.
       0.573
phoU
Phosphate transport system protein PhoU; Plays a role in the regulation of phosphate uptake.
   
    0.540
ACP27010.1
Major facilitator superfamily MFS-1.
   
    0.524
ACP24619.1
Signal peptidase I; Belongs to the peptidase S26 family.
  
    0.479
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is responsible for the expression of the nitrogen fixation genes (nif operon), glnA and dctA for dicarboxylate transport. The open complex (sigma-54 and core RNA polymerase) serves as the receptor for receipt of the melting signal from the remotely bound activator proteins NifA, NtrC, or DctD for the expression of the regulated proteins.
   
    0.451
ACP24264.1
Putative AraC-family transcriptional regulator.
       0.417
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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