STRINGSTRING
NGR_c05540 protein (Sinorhizobium fredii NGR234) - STRING interaction network
"NGR_c05540" - annotation not available in Sinorhizobium fredii NGR234
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NGR_c05540annotation not available (345 aa)    
Predicted Functional Partners:
NGR_c27300
annotation not available (607 aa)
 
          0.767
NGR_c01020
annotation not available (187 aa)
   
          0.666
NGR_c21930
annotation not available (259 aa)
   
          0.661
NGR_c20180
annotation not available (446 aa)
          0.650
NGR_c30790
annotation not available (1852 aa)
 
 
 
  0.622
NGR_c11490
annotation not available (419 aa)
 
       
0.585
NGR_c25260
annotation not available (1256 aa)
 
 
 
  0.573
NGR_c05550
annotation not available (220 aa)
              0.565
NGR_c07230
annotation not available (183 aa)
   
          0.550
NGR_c31060
annotation not available (280 aa)
   
          0.543
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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