Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACP24350.1Hypothetical protein. (345 aa)    
Predicted Functional Partners:
ACP25781.1
Putative calcium-binding hemolysin-like protein.
  
     0.750
ACP26479.1
Hypothetical protein.
  
     0.679
ACP23905.1
Hypothetical protein contains Sel1-like domain.
 
  
 0.602
ACP24541.1
Hypothetical protein.
  
   
 0.590
ACP26637.1
Hypothetical protein.
  
    0.559
motD
Chemotaxis protein motility protein D.
  
    0.525
ACP26750.1
Putative secretion protein Type I; HlyD family.
 
  
 0.515
ACP24050.1
Hypothetical protein.
  
    0.503
fhuF
Ferric iron reductase protein FhuF.
  
     0.496
ACP24351.1
Putative hydrolase.
       0.495
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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