Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACP24365.1Hypothetical protein. (58 aa)    
Predicted Functional Partners:
ACP27126.1
Putative peptidoglycan-binding LysM domain protein.
  
   0.953
ACP24661.1
LysM domain protein.
  
   0.898
ACP25017.1
Putative SpoVR like protein.
   
  
 0.804
ACP24509.1
Putative OsmC-like organic hydroperoxide resistance protein.
   
    0.667
ACP25015.1
Putative serine protein kinase protein.
   
    0.667
motC
Chemotaxis protein motility protein C.
    
 
 0.621
ACP25692.1
Hypothetical protein.
    
 
 0.621
ACP25980.1
Hypothetical protein.
    
 
 0.621
ACP26497.1
Hypothetical protein.
    
 
 0.621
ACP25070.1
Putative transmembrane protein.
  
  
 0.600
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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