STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP24399.1long-chain-fatty-acid--CoA ligase. (508 aa)    
Predicted Functional Partners:
ACP24009.1
Beta-ketoacyl synthase.
 
 0.995
lcdH
Bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
  
 
 0.994
fadB
3-hydroxyacyl-CoA dehydrogenase.
  
 0.984
ACP26365.1
enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase.
  
 0.984
ACP24680.1
malonyl-CoA:acyl carrier protein transacylase.
 
 
 0.983
ACP24299.1
Putative long-chain-fatty-acid--CoA ligase protein.
 
0.977
fadD
long-chain-fatty-acid-CoA-ligase.
 
0.976
ACP24820.1
Cytochrome P450 hydroxylase.
  
 0.974
ACP27139.1
Cytochrome P450 family protein.
  
 0.974
ACP24401.1
Putative thioesterase.
  
 
 0.973
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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