Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACP24486.1Putative phage integrase. (484 aa)    
Predicted Functional Partners:
ACP24485.1
Hypothetical protein.
       0.762
ACP25566.1
Hypothetical protein.
  
    0.725
ACP26698.1
Hypothetical protein.
  
     0.627
ACP26415.1
Putative competence protein F; COMF.
   
    0.553
ACP23905.1
Hypothetical protein contains Sel1-like domain.
  
     0.542
ACP24781.1
Putative transmembrane protein.
  
     0.536
ACP24030.1
Conserved hypothetical protein, contains ice nucleation protein domain.
  
  
 0.516
ACP26392.1
Hypothetical protein.
  
     0.484
ACP25352.1
Hypothetical protein.
  
     0.482
cbtB
Putative cobalt transporter, subunit CbtB.
  
     0.473
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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