Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACP24503.1Hypothetical protein. (153 aa)    
Predicted Functional Partners:
ACP24504.1
Hypothetical protein.
       0.780
ACP26705.1
Putative transcriptional regulator, TetR family.
  
     0.631
ACP25725.1
Putative oxidoreductase.
  
     0.511
ACP24505.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.505
ACP23806.1
Hypothetical protein, DGPFAETKE family.
  
     0.456
ACP25726.1
Putative TetR family transcriptional regulator.
  
     0.426
ACP24820.1
Cytochrome P450 hydroxylase.
  
     0.422
ACP26959.1
Putative transcriptional regulator, MarR family.
  
     0.402
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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