Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cycGDiheme cytochrome c-type. (304 aa)    
Predicted Functional Partners:
fbcF3
Ubiquinol-cytochrome C reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.938
fbcB
Cytochrome B subunit of cytochrome bc1; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.883
ACP27041.1
Putative dehydrogenase transmembrane protein.
 
 
 0.876
cycF
Cytochrome c556.
 
   
 0.874
norB
Nitric-oxide reductase subunit B; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.798
fixO2
Cytochrome-c oxidase FixO2.
  
 
 0.786
fixO1
Cytochrome C oxidase, FixO chain.
  
 
 0.786
fixN2
Cytochrome-c oxidase FixN2; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.756
fixN1
Cytochrome-c oxidase, FixN chain; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.756
ctaE
Cytochrome c oxidase subunit III.
  
 
 0.751
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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