Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACP24565.1Hypothetical protein. (111 aa)    
Predicted Functional Partners:
ACP26022.1
Protein of unknown function UPF0047.
 
  
 0.637
ACP23905.1
Hypothetical protein contains Sel1-like domain.
  
     0.572
ACP25626.1
Putative guanylate/adenylate cyclase.
  
     0.540
ACP24360.1
Putative transmembrane protein.
 
     0.538
fhuF
Ferric iron reductase protein FhuF.
  
     0.528
ACP24566.1
Hypothetical protein.
       0.523
ACP24675.1
Hypothetical protein.
  
     0.492
cya4
Adenylate cyclase Cya3.
  
    0.473
ACP24622.1
Glycerophosphoryl diester phosphodiesterase.
 
     0.470
ACP26208.1
Conserved hypothetical protein.
  
     0.451
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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