STRINGSTRING
NGR_c08010 protein (Sinorhizobium fredii NGR234) - STRING interaction network
"NGR_c08010" - annotation not available in Sinorhizobium fredii NGR234
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NGR_c08010annotation not available (339 aa)    
Predicted Functional Partners:
NGR_c08000
annotation not available (494 aa)
 
   
  0.949
NGR_c08020
annotation not available (318 aa)
 
          0.836
himA
Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control (112 aa)
 
      0.685
fmt
Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus (311 aa)
 
   
  0.625
NGR_c08380
UDP-glucuronate 5’-epimerase; UDP-glucuronic acidepimerase (341 aa)
 
 
  0.616
ugdH
UDP-glucose 6-dehydrogenase; UDP-Glc dehydrogenase; UDP-GlcDH; UDPGDH; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family (437 aa)
 
 
  0.583
NGR_c36230
annotation not available (221 aa)
     
   
  0.571
NGR_c07760
annotation not available (223 aa)
     
   
  0.571
noeJ
Mannose-1-phosphate guanylyltransferase; noeJ; NGR234_10 (512 aa)
 
 
  0.498
lpsE
annotation not available (337 aa)
 
 
  0.482
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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