Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACP24602.1Hypothetical protein. (88 aa)    
Predicted Functional Partners:
cpaD
Pilus assembly protein CpaD.
  
     0.737
tadE1
Pilus assembly protein contains TadE domain.
  
     0.712
cpaE1
Pilus assembly protein CpaE.
  
     0.679
tadG1
Flp pilus assembly protein TadG.
  
     0.664
capA1
Type IV prepilin peptidase CpaA.
  
   
 0.647
ACP25031.1
Hypothetical protein.
  
     0.632
ACP26562.1
Hypothetical protein.
  
     0.625
flgC
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
 
 0.623
ACP25432.1
Hypothetical protein.
 
   
 0.614
ACP26609.1
Hypothetical protein.
  
    0.596
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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