STRINGSTRING
NGR_c09030 protein (Sinorhizobium fredii NGR234) - STRING interaction network
"NGR_c09030" - annotation not available in Sinorhizobium fredii NGR234
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NGR_c09030annotation not available (390 aa)    
Predicted Functional Partners:
NGR_c09020
annotation not available (360 aa)
 
   
    0.991
lptD
LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family (782 aa)
 
 
 
  0.959
NGR_c00180
annotation not available (275 aa)
 
 
  0.944
NGR_c13450
annotation not available (293 aa)
 
          0.697
NGR_c09000
annotation not available (312 aa)
 
 
      0.683
NGR_c18030
annotation not available (309 aa)
 
   
  0.678
lpxK
Tetraacyldisaccharide 4’-kinase; Transfers the gamma-phosphate of ATP to the 4’-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4’-bis-phosphate (lipid IVA) (346 aa)
 
 
  0.605
NGR_c27030
annotation not available (242 aa)
 
          0.589
kpsF
annotation not available (336 aa)
 
        0.568
NGR_c09050
annotation not available (149 aa)
 
          0.553
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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