STRINGSTRING
NGR_c09220 protein (Sinorhizobium fredii NGR234) - STRING interaction network
"NGR_c09220" - annotation not available in Sinorhizobium fredii NGR234
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NGR_c09220annotation not available (212 aa)    
Predicted Functional Partners:
NGR_c16680
annotation not available (2109 aa)
   
          0.745
NGR_c05440
annotation not available (182 aa)
   
          0.703
lptD
LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family (782 aa)
   
   
  0.699
NGR_c33400
annotation not available (176 aa)
   
          0.692
NGR_c00190
annotation not available (187 aa)
   
     
  0.684
NGR_c07600
annotation not available (143 aa)
   
          0.677
NGR_c08170
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane (203 aa)
   
 
  0.661
NGR_c00500
annotation not available (85 aa)
   
          0.657
NGR_c00230
annotation not available (113 aa)
   
          0.657
NGR_c27570
annotation not available (116 aa)
   
          0.656
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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