Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACP24718.1Hypothetical protein. (198 aa)    
Predicted Functional Partners:
nnrD
Putative carbohydrate kinase protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the re [...]
  
 0.795
ACP24717.1
Putative oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
    0.640
ACP23870.1
DEAD/DEAH box protein, ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
   
 0.532
ACP25299.1
ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
   
 0.532
rhlE
Dead-box ATP-dependent RNA helicase.
   
 0.532
ACP24719.1
lysyl-tRNA synthetase 2; lysine--tRNA ligase 2; LysRS 2.
       0.531
ACP24720.1
Putative acid tolerance protein.
       0.531
rlmJ
Conserved hypothetical protein; Specifically methylates the adenine in position 2030 of 23S rRNA.
       0.510
rnr
Exoribonuclease; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
   
 0.488
ACP24338.1
Peptidase, family M16 protein; Belongs to the peptidase M16 family.
   
   0.484
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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