Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACP25011.1Hypothetical protein. (131 aa)    
Predicted Functional Partners:
ACP25604.1
Hypothetical protein.
  
     0.674
ACP25608.1
Hypothetical protein.
  
     0.591
adhC6
Alcohol dehydrogenase class III; Glutathione-dependent formaldehyde dehydrogenase; FDH; FALDH; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
       0.535
ACP25012.1
Hypothetical protein.
       0.532
ACP25601.1
Putative trimethylamine methyltransferase protein; Belongs to the trimethylamine methyltransferase family.
  
     0.506
ACP25009.1
Putative cytoplasmic protein; Belongs to the UPF0178 family.
  
    0.499
ACP25600.1
Hypothetical protein.
  
     0.476
ACP24627.1
Hypothetical protein.
  
     0.461
ACP25007.1
Putative esterase; Serine hydrolase involved in the detoxification of formaldehyde.
       0.453
ACP25008.1
Putative transmembrane protein.
       0.448
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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