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nifR protein (Sinorhizobium fredii NGR234) - STRING interaction network
"nifR" - tRNA-dihydrouridine synthase in Sinorhizobium fredii NGR234
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
nifRtRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines (342 aa)    
Predicted Functional Partners:
ntrB
annotation not available (384 aa)
     
 
  0.914
ntrC
Sensor glnL; nitrogen regulator I, NRI (484 aa)
         
  0.892
ispDF
Bifunctional enzyme IspD/IspF; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) (411 aa)
   
   
  0.707
cinA
annotation not available (165 aa)
              0.636
NGR_c13000
annotation not available (287 aa)
   
      0.632
ntrX
annotation not available (454 aa)
         
  0.623
NGR_c12980
annotation not available (757 aa)
         
  0.606
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA (88 aa)
   
        0.558
hfq
RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs (80 aa)
         
  0.534
NGR_c02280
annotation not available (206 aa)
 
        0.526
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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