STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP25251.1Flavoprotein wrbA 1. (199 aa)    
Predicted Functional Partners:
ACP27358.1
NAD(P)H dehydrogenase; Quinone.
    
 0.918
ACP25751.1
Putative nucleoside-diphosphate-sugar epimerase.
    
  0.901
ubiE3
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
     
  0.900
ACP25146.1
Hypothetical protein.
   
  
 0.776
ACP27126.1
Putative peptidoglycan-binding LysM domain protein.
   
  
 0.629
ACP24661.1
LysM domain protein.
  
  
 0.616
ACP25015.1
Putative serine protein kinase protein.
   
    0.568
ACP25250.1
Putative molybdenum cofactor biosynthesis protein.
  
    0.558
dnaJ3
Chaperone protein DnaJ.
   
  
 0.502
ACP25252.1
Putative transposase for insertion sequence NGRIS-22b; Similar to y4rI of pNGR234a.
       0.470
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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