Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACP25278.1Putative glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (336 aa)    
Predicted Functional Partners:
ACP25277.1
Hypothetical protein.
 
     0.927
ACP25279.1
Hypothetical protein.
 
     0.890
ACP25280.1
Predicted transcriptional regulator protein, LacI family.
 
     0.823
serC
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
 
 
 0.767
ACP25281.1
Predicted sugar ABC transporter, substrate-binding protein.
 
     0.735
ACP27029.1
Conserved hypothetical protein.
 
     0.626
ACP24399.1
long-chain-fatty-acid--CoA ligase.
  
 
 0.466
gltB1
Glutamate synthase [NADPH] large chain.
  
 
 0.445
ACP26608.1
Hypothetical protein.
   
  0.430
thrA
Homoserine dehydrogenase.
 
 
 0.424
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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