STRINGSTRING
lpsC protein (Sinorhizobium fredii NGR234) - STRING interaction network
"lpsC" - annotation not available in Sinorhizobium fredii NGR234
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lpsCannotation not available (270 aa)    
Predicted Functional Partners:
lpsD
annotation not available (343 aa)
 
 
  0.959
lpsE
annotation not available (337 aa)
 
 
  0.943
lpsB
annotation not available (351 aa)
   
 
  0.747
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3’terminus. GreA releases sequences of 2 to 3 nucleotides (255 aa)
           
  0.661
NGR_c15670
annotation not available (156 aa)
         
  0.625
NGR_c10430
annotation not available (1153 aa)
   
 
      0.472
NGR_c09100
annotation not available (885 aa)
 
 
 
  0.470
NGR_c10240
annotation not available (143 aa)
   
 
      0.458
wbgA
Uncharacterized protein y4gI; y4gI; NGR234_124 (909 aa)
   
 
  0.451
NGR_c15900
annotation not available (196 aa)
   
          0.448
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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