STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NGR_c16550annotation not available (308 aa)    
Predicted Functional Partners:
NGR_c16540
annotation not available
  
 0.977
NGR_c34830
annotation not available
  
     0.749
NGR_c05220
annotation not available
  
     0.707
NGR_c16560
annotation not available
       0.683
NGR_c12490
annotation not available
  
     0.633
NGR_c00230
annotation not available
  
     0.630
NGR_c34120
annotation not available
  
     0.616
NGR_c28400
annotation not available
  
     0.609
NGR_c36180
annotation not available
  
     0.590
NGR_c09520
annotation not available
  
     0.588
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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