Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACP25472.1Probable hydrolase. (305 aa)    
Predicted Functional Partners:
ACP25473.1
Putative transcriptional regulator, MarR family.
 
     0.627
ACP23809.1
Putative glyoxalase family protein.
 
    0.565
ACP25471.1
Putative pyridoxine biosynthesis protein.
       0.554
ACP24130.1
AsmA protein family precursor.
  
     0.498
motD
Chemotaxis protein motility protein D.
  
     0.471
ACP23905.1
Hypothetical protein contains Sel1-like domain.
  
     0.470
ACP26119.1
Hypothetical protein.
  
     0.417
ACP25887.1
6-aminohexanoate-dimer hydrolase protein.
  
     0.409
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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