STRINGSTRING
hcpD protein (Sinorhizobium fredii NGR234) - STRING interaction network
"hcpD" - Beta-lactamase HcpD in Sinorhizobium fredii NGR234
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hcpDBeta-lactamase HcpD; Cysteine-richprotein D; PBP 4; penicillin-binding protein 4 (201 aa)    
Predicted Functional Partners:
NGR_c28240
annotation not available (378 aa)
 
       
0.859
NGR_c17170
annotation not available (758 aa)
   
   
  0.564
NGR_a00200
Uncharacterized protein y4bJ; y4bJ; NGR234_30 (630 aa)
 
 
      0.486
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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