STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP25542.1Hypothetical protein. (253 aa)    
Predicted Functional Partners:
ACP25541.1
Probable oxidoreductase protein.
 
  
 0.963
ACP25547.1
Probable sugar ABC transporter, substrate-binding protein.
 
    0.754
ACP25546.1
Putative transmembrane component of ABC transporter.
 
    0.732
ACP25545.1
Putative transmembrane component of ABC transporter.
 
    0.687
ACP26688.1
Putative oxidoreductase /dehydrogenase protein.
 
  
 0.681
ACP25543.1
Beta-mannosidase precursor.
 
   
 0.657
iolB
Myo-inositol catabolism IolB domain protein.
  
  
 0.611
tolB2
Putative TolB-like protein.
 
     0.610
ACP25981.1
Putative oxidoreductase.
 
  
 0.607
iolD
Myo-inositol catabolism, acetolactate synthase protein IolD; Belongs to the TPP enzyme family.
  
  
 0.574
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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