Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACP25687.1Conserved hypothetical protein. (314 aa)    
Predicted Functional Partners:
ACP25688.1
Conserved hypothetical protein.
 
     0.741
ACP24593.1
Hypothetical membrane spanning protein.
 
  
 0.722
ACP24799.1
Predicted glycosyl transferase.
  
  
 0.709
ACP25646.1
Hypothetical protein.
  
     0.709
ACP25886.1
Lytic murein transglycosylase.
  
   
 0.673
ACP24010.1
Putative polysaccharide biosynthesis/export protein.
 
  
 0.656
ACP26751.1
TPR repeat-containing protein; Similar to cellulose biosynthesis protein.
 
   
 0.651
ACP24929.1
Hypothetical protein.
  
     0.611
ACP24627.1
Hypothetical protein.
  
     0.606
ACP24009.1
Beta-ketoacyl synthase.
 
 
 0.597
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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