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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACP25692.1Hypothetical protein. (147 aa)    
Predicted Functional Partners:
ACP25481.1
OmpA family protein.
 
 
 
 0.804
ACP23970.1
Hypothetical protein contains peptidoglycan binding domain.
 
 
 0.802
ACP24006.1
Conserved hypothetical protein, contains sulfatase protein domain.
  
   
 0.765
ACP26751.1
TPR repeat-containing protein; Similar to cellulose biosynthesis protein.
  
     0.754
ftsK2
DNA translocase FtsK.
   
 
 0.732
ACP24009.1
Beta-ketoacyl synthase.
 
 
 0.731
ACP25646.1
Hypothetical protein.
  
     0.697
ACP25456.1
Hypothetical protein, possibly linked to QS and autoinducer synthesis.
  
     0.665
ACP25901.1
Hypothetical protein.
  
     0.665
ACP25681.1
Putative phage repressor.
  
    0.664
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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