Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACP25743.1Transglutaminase-like cysteine peptidase, BTLCP. (187 aa)    
Predicted Functional Partners:
ACP26505.1
Hypothetical protein.
  
     0.755
ACP25100.1
Hypothetical protein.
  
     0.753
ACP24318.1
Invasion associated locus B.
  
     0.684
ACP25044.1
Hypothetical protein.
  
     0.674
ACP26582.1
Hypothetical protein.
  
     0.655
ACP24340.1
Hypothetical protein.
  
     0.651
ACP26509.1
Conserved hypothetical protein.
  
     0.639
ACP24650.1
Hypothetical protein.
  
     0.617
ACP24556.1
Hypothetical protein.
  
     0.610
ACP23978.1
Hypothetical protein, putative transmembrane protein.
  
     0.587
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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