STRINGSTRING
NGR_c19900 protein (Sinorhizobium fredii NGR234) - STRING interaction network
"NGR_c19900" - annotation not available in Sinorhizobium fredii NGR234
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NGR_c19900annotation not available (133 aa)    
Predicted Functional Partners:
NGR_c19910
annotation not available (50 aa)
              0.845
NGR_c19920
annotation not available (476 aa)
 
          0.724
pdxJ
Pyridoxine 5’-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5’-phosphate (PNP) and inorganic phosphate (292 aa)
              0.550
NGR_c09690
annotation not available (179 aa)
   
          0.537
NGR_c02250
annotation not available (158 aa)
 
     
  0.536
NGR_c34130
annotation not available (180 aa)
   
          0.520
NGR_a01360
UPF0262 protein y4uD; y4uD; NGR234_387; Belongs to the UPF0262 family (165 aa)
 
     
  0.516
NGR_c13240
annotation not available (117 aa)
   
          0.459
NGR_c27610
annotation not available (197 aa)
   
     
  0.451
NGR_c22900
annotation not available (166 aa)
   
          0.424
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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