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NGR_c20090 protein (Sinorhizobium fredii NGR234) - STRING interaction network
"NGR_c20090" - Predicted transmembrane transcriptional regulator in Sinorhizobium fredii NGR234
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NGR_c20090Predicted transmembrane transcriptional regulator; Anti-sigma factor (270 aa)    
Predicted Functional Partners:
NGR_c20070
annotation not available (124 aa)
 
     
  0.971
NGR_c20080
annotation not available (182 aa)
 
 
 
  0.946
rpoE
annotation not available (172 aa)
 
 
 
  0.532
NGR_c16160
annotation not available (169 aa)
 
 
 
  0.518
NGR_c20060
annotation not available (343 aa)
              0.517
NGR_c03690
annotation not available (210 aa)
 
          0.470
NGR_c24660
annotation not available (264 aa)
     
 
  0.466
NGR_c03540
annotation not available (265 aa)
     
 
  0.466
NGR_c24640
annotation not available (183 aa)
     
 
  0.465
NGR_c03680
annotation not available (405 aa)
   
          0.458
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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