Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACP25877.1Hypothetical protein. (133 aa)    
Predicted Functional Partners:
ftsI
Penicillin-binding protein 3.
 
    0.862
mraW
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
       0.824
mraZ
Protein MraZ; Belongs to the MraZ family.
       0.804
ACP25433.1
Kinesin-like protein.
  
     0.726
ACP24561.1
Hypothetical protein.
  
     0.721
ACP24562.1
Hypothetical protein.
  
     0.720
ACP26505.1
Hypothetical protein.
  
     0.712
ACP24744.1
Putative transmemrbane protein.
  
     0.709
ACP25465.1
Hypothetical protein.
  
     0.704
ACP25244.1
Putative invasion-associated protein.
  
     0.691
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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