Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACP25883.1Molecular chaperone, DnaJ family. (272 aa)    
Predicted Functional Partners:
ACP25039.1
Possible nitrogen-fixing NifU-like protein.
  
 0.985
dnaK2
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.910
ACP24586.1
Molecular chaperone, Hsp70 family.
  
 0.889
ACP25308.1
Cysteine desulfurase.
  
 0.872
ACP25882.1
N-acetylmuramoyl-L-alanine amidase, family 2.
     
 0.830
hesB
Protein HesB, vegetative; Belongs to the HesB/IscA family.
  
 
 0.787
ACP25314.1
Putative HesB nitrogen fixation family protein; Belongs to the HesB/IscA family.
  
 
 0.787
fliL
Putative flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.547
clpX
ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
   
 
 0.530
ACP23961.1
Hypothetical protein.
  
     0.505
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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